IL_7NHN_036
3D structure
- PDB id
- 7NHN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UCCCCAAA*UA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NHN_036 not in the Motif Atlas
- Geometric match to IL_5J7L_278
- Geometric discrepancy: 0.1286
- The information below is about IL_5J7L_278
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
7NHN|1|A|U|1050
7NHN|1|A|C|1051
7NHN|1|A|C|1052
7NHN|1|A|C|1053
7NHN|1|A|C|1054
7NHN|1|A|A|1055
7NHN|1|A|A|1056
7NHN|1|A|A|1057
*
7NHN|1|A|U|1196
7NHN|1|A|A|1197
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain M
- 50S ribosomal protein L13
- Chain T
- 50S ribosomal protein L20
Coloring options: