IL_7NHN_042

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUG*CACC

Length

8 nucleotides

Bulged bases

7NHN|1|A|U|1107

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHN_042 not in the Motif Atlas

Homologous match to IL_5J7L_285

Geometric discrepancy: 0.3839

The information below is about IL_5J7L_285

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

7NHN|1|A|G|1105
7NHN|1|A|U|1106
7NHN|1|A|U|1107
7NHN|1|A|G|1108
*
7NHN|1|A|C|1122
7NHN|1|A|A|1123
7NHN|1|A|C|1124
7NHN|1|A|C|1125

Current chains

Chain A

23S rRNA

Nearby chains