IL_7NHN_057

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUAG*UGAUU

Length

9 nucleotides

Bulged bases

7NHN|1|A|U|1606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHN_057 not in the Motif Atlas

Homologous match to IL_7RQB_057

Geometric discrepancy: 0.154

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7NHN|1|A|A|1487
7NHN|1|A|U|1488
7NHN|1|A|A|1489
7NHN|1|A|G|1490
*
7NHN|1|A|U|1603
7NHN|1|A|G|1604
7NHN|1|A|A|1605
7NHN|1|A|U|1606
7NHN|1|A|U|1607

Current chains

Chain A

23S rRNA

Nearby chains