IL_7NHN_058

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAG*UGAUG

Length

9 nucleotides

Bulged bases

7NHN|1|A|U|1574

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHN_058 not in the Motif Atlas

Homologous match to IL_5J7L_299

Geometric discrepancy: 0.2657

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7NHN|1|A|C|1518
7NHN|1|A|A|1519
7NHN|1|A|A|1520
7NHN|1|A|G|1521
*
7NHN|1|A|U|1571
7NHN|1|A|G|1572
7NHN|1|A|A|1573
7NHN|1|A|U|1574
7NHN|1|A|G|1575

Current chains

Chain A

23S rRNA

Nearby chains