IL_7NHN_059

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAG*UGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHN_059 not in the Motif Atlas

Geometric match to IL_4LFB_060

Geometric discrepancy: 0.2168

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.3

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

47

Unit IDs

7NHN|1|A|U|1525
7NHN|1|A|G|1526
7NHN|1|A|A|1527
7NHN|1|A|G|1528
*
7NHN|1|A|U|1564
7NHN|1|A|G|1565
7NHN|1|A|A|1566
7NHN|1|A|G|1567

Current chains

Chain A

23S rRNA

Nearby chains