IL_7NHN_062

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHN_062 not in the Motif Atlas

Homologous match to IL_4WF9_062

Geometric discrepancy: 0.1251

The information below is about IL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.5

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

7NHN|1|A|G|1700
7NHN|1|A|A|1701
7NHN|1|A|G|1702
7NHN|1|A|A|1703
7NHN|1|A|A|1704
7NHN|1|A|C|1705
*
7NHN|1|A|G|2037
7NHN|1|A|A|2038
7NHN|1|A|C|2039

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L3

Chain Q

50S ribosomal protein L17