IL_7NHN_073

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAAG*UGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHN_073 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.1398

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

7NHN|1|A|U|1884
7NHN|1|A|U|1885
7NHN|1|A|A|1886
7NHN|1|A|A|1887
7NHN|1|A|G|1888
*
7NHN|1|A|U|1920
7NHN|1|A|G|1921
7NHN|1|A|A|1922
7NHN|1|A|A|1923
7NHN|1|A|G|1924

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

Lmo0919 protein