IL_7NHN_074

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGGAG*CGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHN_074 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.1796

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

7NHN|1|A|A|1889
7NHN|1|A|G|1890
7NHN|1|A|G|1891
7NHN|1|A|A|1892
7NHN|1|A|G|1893
*
7NHN|1|A|C|1915
7NHN|1|A|G|1916
7NHN|1|A|A|1917
7NHN|1|A|A|1918
7NHN|1|A|U|1919

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

Lmo0919 protein