IL_7NHN_086

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUACAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHN_086 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.1426

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

7NHN|1|A|G|2143
7NHN|1|A|U|2144
7NHN|1|A|A|2145
7NHN|1|A|C|2146
7NHN|1|A|A|2147
7NHN|1|A|G|2148
7NHN|1|A|G|2149
7NHN|1|A|A|2150
7NHN|1|A|U|2151
7NHN|1|A|A|2152
7NHN|1|A|G|2153
*
7NHN|1|A|C|2211
7NHN|1|A|C|2212

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

Lmo0919 protein