IL_7NHN_087

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAG*CAAUGGUGGGAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHN_087 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.1444

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

7NHN|1|A|G|2157
7NHN|1|A|G|2158
7NHN|1|A|A|2159
7NHN|1|A|G|2160
*
7NHN|1|A|C|2194
7NHN|1|A|A|2195
7NHN|1|A|A|2196
7NHN|1|A|U|2197
7NHN|1|A|G|2198
7NHN|1|A|G|2199
7NHN|1|A|U|2200
7NHN|1|A|G|2201
7NHN|1|A|G|2202
7NHN|1|A|G|2203
7NHN|1|A|A|2204
7NHN|1|A|U|2205
7NHN|1|A|A|2206
7NHN|1|A|C|2207

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

Lmo0919 protein