IL_7NHN_116

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAUGGUAG*CGAGAGUAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHN_116 not in the Motif Atlas

Homologous match to IL_5J7L_359

Geometric discrepancy: 0.1103

The information below is about IL_5J7L_359

Detailed Annotation

Bacterial 5S Loop E

Broad Annotation

Loop E

Motif group

IL_56455.6

Basepair signature

cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7NHN|1|B|C|69
7NHN|1|B|A|70
7NHN|1|B|A|71
7NHN|1|B|U|72
7NHN|1|B|G|73
7NHN|1|B|G|74
7NHN|1|B|U|75
7NHN|1|B|A|76
7NHN|1|B|G|77
*
7NHN|1|B|C|95
7NHN|1|B|G|96
7NHN|1|B|A|97
7NHN|1|B|G|98
7NHN|1|B|A|99
7NHN|1|B|G|100
7NHN|1|B|U|101
7NHN|1|B|A|102
7NHN|1|B|G|103

Current chains

Chain B

5S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain P

50S ribosomal protein L16

Chain Z

50S ribosomal protein L27