IL_7NHN_128
3D structure
- PDB id
- 7NHN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAUUAG*CAACGAUG
- Length
- 14 nucleotides
- Bulged bases
- 7NHN|1|a|U|254, 7NHN|1|a|C|290
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NHN_128 not in the Motif Atlas
- Homologous match to IL_5J7L_014
- Geometric discrepancy: 0.114
- The information below is about IL_5J7L_014
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.3
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7NHN|1|a|C|252
7NHN|1|a|A|253
7NHN|1|a|U|254
7NHN|1|a|U|255
7NHN|1|a|A|256
7NHN|1|a|G|257
*
7NHN|1|a|C|287
7NHN|1|a|A|288
7NHN|1|a|A|289
7NHN|1|a|C|290
7NHN|1|a|G|291
7NHN|1|a|A|292
7NHN|1|a|U|293
7NHN|1|a|G|294
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain m
- 30S ribosomal protein S12
- Chain r
- 30S ribosomal protein S17
Coloring options: