IL_7NHN_170

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHN_170 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1518

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.3

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

7NHN|1|a|C|1312
7NHN|1|a|G|1313
7NHN|1|a|G|1314
7NHN|1|a|A|1315
7NHN|1|a|U|1316
7NHN|1|a|U|1317
*
7NHN|1|a|A|1338
7NHN|1|a|U|1339
7NHN|1|a|G|1340
7NHN|1|a|A|1341
7NHN|1|a|A|1342
7NHN|1|a|G|1343

Current chains

Chain a

16S rRNA

Nearby chains

Chain 0

Lmo0919 protein

Chain n

30S ribosomal protein S13