IL_7NHN_184

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHN_184 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.0868

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.2

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

11

Unit IDs

7NHN|1|A|G|1715
7NHN|1|A|G|1716
7NHN|1|A|A|1717
7NHN|1|A|A|1718
7NHN|1|A|C|1719
7NHN|1|A|U|1720
7NHN|1|A|C|1721
7NHN|1|A|G|1722
7NHN|1|A|G|1723
*
7NHN|1|A|C|2023
7NHN|1|A|U|2024
7NHN|1|A|G|2025
7NHN|1|A|U|2026
7NHN|1|A|C|2027

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L3

Chain N

50S ribosomal protein L14