IL_7NHN_188

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UG*UAA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHN_188 not in the Motif Atlas

Homologous match to IL_4LFB_028

Geometric discrepancy: 0.2769

The information below is about IL_4LFB_028

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.9

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

7NHN|1|a|U|667
7NHN|1|a|G|668
*
7NHN|1|a|U|757
7NHN|1|a|A|758
7NHN|1|a|A|759

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S15