IL_7NQH_023

3D structure

PDB id

7NQH (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1a and P-site tRNAMet

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUACUACUCG*CCUAAAAC

Length

18 nucleotides

Bulged bases

7NQH|1|AA|C|494

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NQH_023 not in the Motif Atlas

Geometric match to IL_6UFM_002

Geometric discrepancy: 0.3784

The information below is about IL_6UFM_002

Detailed Annotation

10x8 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_22278.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

7NQH|1|AA|G|491
7NQH|1|AA|U|492
7NQH|1|AA|A|493
7NQH|1|AA|C|494
7NQH|1|AA|U|495
7NQH|1|AA|A|496
7NQH|1|AA|C|497
7NQH|1|AA|U|498
7NQH|1|AA|C|499
7NQH|1|AA|G|500
*
7NQH|1|AA|C|507
7NQH|1|AA|C|508
7NQH|1|AA|U|509
7NQH|1|AA|A|510
7NQH|1|AA|A|511
7NQH|1|AA|A|512
7NQH|1|AA|A|513
7NQH|1|AA|C|514

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AL

Mitochondrial ribosomal protein S12

Chain AO

uS15m

Chain An

Aurora kinase A interacting protein 1