IL_7NQH_030

3D structure

PDB id

7NQH (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1a and P-site tRNAMet

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CG*UCAAG

Length

7 nucleotides

Bulged bases

7NQH|1|AA|C|685, 7NQH|1|AA|A|686

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NQH_030 not in the Motif Atlas

Homologous match to IL_5J7L_048

Geometric discrepancy: 0.2367

The information below is about IL_5J7L_048

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

7NQH|1|AA|C|617
7NQH|1|AA|G|618
*
7NQH|1|AA|U|684
7NQH|1|AA|C|685
7NQH|1|AA|A|686
7NQH|1|AA|A|687
7NQH|1|AA|G|688

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AC

Mitochondrial ribosomal protein S24

Chain AE

Mitochondrial ribosomal protein S5

Chain AJ

Mitochondrial ribosomal protein S10

Chain AN

Mitochondrial ribosomal protein S14