IL_7NQH_055

3D structure

PDB id

7NQH (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1a and P-site tRNAMet

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAAC*GUGAUAGC

Length

13 nucleotides

Bulged bases

7NQH|1|BA|G|348, 7NQH|1|BA|G|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NQH_055 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.1639

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7NQH|1|BA|G|242
7NQH|1|BA|A|243
7NQH|1|BA|A|244
7NQH|1|BA|A|245
7NQH|1|BA|C|246
*
7NQH|1|BA|G|346
7NQH|1|BA|U|347
7NQH|1|BA|G|348
7NQH|1|BA|A|349
7NQH|1|BA|U|350
7NQH|1|BA|A|351
7NQH|1|BA|G|352
7NQH|1|BA|C|353

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BF

Mitochondrial ribosomal protein L4

Chain BP

uL15m

Chain Bn

Mitochondrial ribosomal protein L51