IL_7NQL_073

3D structure

PDB id

7NQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with ICT1 and P site tRNAMet

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NQL_073 not in the Motif Atlas

Homologous match to IL_7RQB_066

Geometric discrepancy: 0.1342

The information below is about IL_7RQB_066

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

7NQL|1|BA|G|801
7NQL|1|BA|G|802
7NQL|1|BA|A|803
7NQL|1|BA|A|804
*
7NQL|1|BA|U|988
7NQL|1|BA|C|989

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BE

ICT1

Chain BO

uL14m

Chain BT

Mitochondrial ribosomal protein L19