IL_7NQL_084

3D structure

PDB id

7NQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with ICT1 and P site tRNAMet

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

7NQL|1|BA|A|1262

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NQL_084 not in the Motif Atlas

Homologous match to IL_7RQB_081

Geometric discrepancy: 0.0791

The information below is about IL_7RQB_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_42622.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

33

Unit IDs

7NQL|1|BA|G|1065
7NQL|1|BA|A|1066
*
7NQL|1|BA|U|1261
7NQL|1|BA|A|1262
7NQL|1|BA|C|1263
7NQL|1|BA|C|1264

Current chains

Chain BA

16S rRNA

Nearby chains

Chain AV

fMet-tRNAMet (P site)

Chain BL

Peptidyl-tRNA hydrolase ICT1, mitochondrial

Chain Bi

Mitochondrial ribosomal protein L45