3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CC*GCG
Length
5 nucleotides
Bulged bases
7NRC|1|LC|C|151
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7NRC_002 not in the Motif Atlas
Homologous match to IL_5TBW_002
Geometric discrepancy: 0.1172
The information below is about IL_5TBW_002
Detailed Annotation
Single bulged C
Broad Annotation
No text annotation
Motif group
IL_61258.13
Basepair signature
cWW-L-cWW
Number of instances in this motif group
40

Unit IDs

7NRC|1|LA|C|7
7NRC|1|LA|C|8
*
7NRC|1|LC|G|150
7NRC|1|LC|C|151
7NRC|1|LC|G|152

Current chains

Chain LA
25S rRNA (3184-MER)
Chain LC
5.8S rRNA (158-MER)

Nearby chains

Chain LJ
60S ribosomal protein L8-A
Chain LP
60S ribosomal protein L15-A
Chain LZ
60S ribosomal protein L25

Coloring options:


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