IL_7NRC_011

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGG*UUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_011 not in the Motif Atlas

Geometric match to IL_3ICQ_003

Geometric discrepancy: 0.1821

The information below is about IL_3ICQ_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

7NRC|1|LA|G|171
7NRC|1|LA|G|172
7NRC|1|LA|G|173
*
7NRC|1|LA|U|245
7NRC|1|LA|U|246
7NRC|1|LA|C|247

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LN

60S ribosomal protein L13-A

Chain Lj

60S ribosomal protein L35-A