IL_7NRC_031

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_031 not in the Motif Atlas

Geometric match to IL_5J7L_263

Geometric discrepancy: 0.0919

The information below is about IL_5J7L_263

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

7NRC|1|LA|U|834
7NRC|1|LA|G|835
7NRC|1|LA|A|836
7NRC|1|LA|A|837
7NRC|1|LA|G|838
*
7NRC|1|LA|U|855
7NRC|1|LA|G|856
7NRC|1|LA|G|857
7NRC|1|LA|A|858
7NRC|1|LA|G|859

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LD

60S ribosomal protein L2-A

Chain LT

60S ribosomal protein L19-A

Chain Lr

60S ribosomal protein L43-A