IL_7NRC_052
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 7NRC|1|LA|C|1196, 7NRC|1|LA|A|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRC_052 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.0988
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7NRC|1|LA|G|1194
7NRC|1|LA|A|1195
7NRC|1|LA|C|1196
7NRC|1|LA|A|1197
7NRC|1|LA|C|1198
7NRC|1|LA|C|1199
7NRC|1|LA|A|1200
7NRC|1|LA|C|1201
7NRC|1|LA|A|1202
7NRC|1|LA|A|1203
7NRC|1|LA|A|1204
7NRC|1|LA|A|1205
*
7NRC|1|LA|U|1299
7NRC|1|LA|G|1300
7NRC|1|LA|A|1301
7NRC|1|LA|A|1302
7NRC|1|LA|A|1303
7NRC|1|LA|A|1304
7NRC|1|LA|U|1305
7NRC|1|LA|G|1306
7NRC|1|LA|G|1307
7NRC|1|LA|A|1308
7NRC|1|LA|U|1309
7NRC|1|LA|G|1310
7NRC|1|LA|G|1311
7NRC|1|LA|C|1312
7NRC|1|LA|G|1313
7NRC|1|LA|C|1314
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LB
- 5S ribosomal RNA; 5S rRNA
- Chain LE
- 60S ribosomal protein L3
- Chain LI
- 60S ribosomal protein L7-A
- Chain LL
- 60S ribosomal protein L10
- Chain LQ
- 60S ribosomal protein L16-A
- Chain Lh
- 60S ribosomal protein L33-A
- Chain Lo
- 60S ribosomal protein L40-A
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