IL_7NRC_054

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

7NRC|1|LA|A|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_054 not in the Motif Atlas

Geometric match to IL_4V9F_042

Geometric discrepancy: 0.2065

The information below is about IL_4V9F_042

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

7NRC|1|LA|U|1218
7NRC|1|LA|C|1219
7NRC|1|LA|U|1220
7NRC|1|LA|A|1221
7NRC|1|LA|G|1222
7NRC|1|LA|A|1223
7NRC|1|LA|C|1224
7NRC|1|LA|A|1225
7NRC|1|LA|G|1226
*
7NRC|1|LA|C|1283
7NRC|1|LA|C|1284
7NRC|1|LA|G|1285
7NRC|1|LA|A|1286
7NRC|1|LA|A|1287

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LK

60S ribosomal protein L9-A

Chain LU

60S ribosomal protein L20-A

Chain Lo

60S ribosomal protein L40-A