IL_7NRC_066

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCUUC*GGAAUA

Length

11 nucleotides

Bulged bases

7NRC|1|LA|U|1629

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_066 not in the Motif Atlas

Homologous match to IL_5TBW_066

Geometric discrepancy: 0.2305

The information below is about IL_5TBW_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48431.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

7NRC|1|LA|U|1627
7NRC|1|LA|C|1628
7NRC|1|LA|U|1629
7NRC|1|LA|U|1630
7NRC|1|LA|C|1631
*
7NRC|1|LA|G|1811
7NRC|1|LA|G|1812
7NRC|1|LA|A|1813
7NRC|1|LA|A|1814
7NRC|1|LA|U|1815
7NRC|1|LA|A|1816

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain Lb

60S ribosomal protein L27-A