IL_7NRC_071

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAAC*GGAAGA

Length

11 nucleotides

Bulged bases

7NRC|1|LA|G|1751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_071 not in the Motif Atlas

Homologous match to IL_8C3A_077

Geometric discrepancy: 0.0842

The information below is about IL_8C3A_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69313.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

7NRC|1|LA|U|1694
7NRC|1|LA|U|1695
7NRC|1|LA|A|1696
7NRC|1|LA|A|1697
7NRC|1|LA|C|1698
*
7NRC|1|LA|G|1747
7NRC|1|LA|G|1748
7NRC|1|LA|A|1749
7NRC|1|LA|A|1750
7NRC|1|LA|G|1751
7NRC|1|LA|A|1752

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain Li

60S ribosomal protein L34-A

Chain Lm

60S ribosomal protein L38