IL_7NRC_072

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAUCA*UCUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_072 not in the Motif Atlas

Homologous match to IL_5TBW_072

Geometric discrepancy: 0.1363

The information below is about IL_5TBW_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_39753.2

Basepair signature

cWW-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

7NRC|1|LA|U|1702
7NRC|1|LA|U|1703
7NRC|1|LA|A|1704
7NRC|1|LA|U|1705
7NRC|1|LA|C|1706
7NRC|1|LA|A|1707
*
7NRC|1|LA|U|1737
7NRC|1|LA|C|1738
7NRC|1|LA|U|1739
7NRC|1|LA|U|1740
7NRC|1|LA|A|1741
7NRC|1|LA|U|1742
7NRC|1|LA|G|1743

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain Li

60S ribosomal protein L34-A