IL_7NRC_083

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

7NRC|1|LA|U|2159, 7NRC|1|LA|U|2175, 7NRC|1|LA|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_083 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.0892

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

7NRC|1|LA|C|2156
7NRC|1|LA|G|2157
7NRC|1|LA|A|2158
7NRC|1|LA|U|2159
7NRC|1|LA|G|2160
7NRC|1|LA|G|2161
*
7NRC|1|LA|U|2173
7NRC|1|LA|G|2174
7NRC|1|LA|U|2175
7NRC|1|LA|U|2176
7NRC|1|LA|G|2177
7NRC|1|LA|A|2178
7NRC|1|LA|C|2179
7NRC|1|LA|G|2180

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LD

60S ribosomal protein L2-A

Chain Lr

60S ribosomal protein L43-A