3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CUG*CG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7NRC_086 not in the Motif Atlas
Geometric match to IL_7A0S_054
Geometric discrepancy: 0.2339
The information below is about IL_7A0S_054
Detailed Annotation
Single stack bend
Broad Annotation
No text annotation
Motif group
IL_26793.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
16

Unit IDs

7NRC|1|LA|C|2204
7NRC|1|LA|U|2205
7NRC|1|LA|G|2206
*
7NRC|1|LA|C|2237
7NRC|1|LA|G|2238

Current chains

Chain LA
25S rRNA (3184-MER)

Nearby chains

Chain LD
60S ribosomal protein L2-A
Chain Ls
eiF5A
Chain S2
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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