3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UCAAAGU*AACCAAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7NRC_088 not in the Motif Atlas
Homologous match to IL_8C3A_093
Geometric discrepancy: 0.1278
The information below is about IL_8C3A_093
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_36973.8
Basepair signature
cWW-tSH-L-R-L-R-L-R-cWW-cWW
Number of instances in this motif group
3

Unit IDs

7NRC|1|LA|U|2211
7NRC|1|LA|C|2212
7NRC|1|LA|A|2213
7NRC|1|LA|A|2214
7NRC|1|LA|A|2215
7NRC|1|LA|G|2216
7NRC|1|LA|U|2217
*
7NRC|1|LA|A|2228
7NRC|1|LA|A|2229
7NRC|1|LA|C|2230
7NRC|1|LA|C|2231
7NRC|1|LA|A|2232
7NRC|1|LA|A|2233
7NRC|1|LA|G|2234

Current chains

Chain LA
25S rRNA (3184-MER)

Nearby chains

Chain Lk
60S ribosomal protein L36-A
Chain Lt
L1 60S ribosomal protein

Coloring options:


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