IL_7NRC_088
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UCAAAGU*AACCAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRC_088 not in the Motif Atlas
- Homologous match to IL_8C3A_093
- Geometric discrepancy: 0.1278
- The information below is about IL_8C3A_093
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_36973.8
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
7NRC|1|LA|U|2211
7NRC|1|LA|C|2212
7NRC|1|LA|A|2213
7NRC|1|LA|A|2214
7NRC|1|LA|A|2215
7NRC|1|LA|G|2216
7NRC|1|LA|U|2217
*
7NRC|1|LA|A|2228
7NRC|1|LA|A|2229
7NRC|1|LA|C|2230
7NRC|1|LA|C|2231
7NRC|1|LA|A|2232
7NRC|1|LA|A|2233
7NRC|1|LA|G|2234
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain Lk
- 60S ribosomal protein L36-A
- Chain Lt
- L1 60S ribosomal protein
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