IL_7NRC_090

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

7NRC|1|LA|A|2281, 7NRC|1|LA|C|2287, 7NRC|1|LA|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_090 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.1141

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7NRC|1|LA|C|2277
7NRC|1|LA|C|2278
7NRC|1|LA|A|2279
7NRC|1|LA|A|2280
7NRC|1|LA|A|2281
7NRC|1|LA|U|2282
7NRC|1|LA|G|2283
7NRC|1|LA|C|2284
7NRC|1|LA|C|2285
7NRC|1|LA|U|2286
7NRC|1|LA|C|2287
7NRC|1|LA|G|2288
*
7NRC|1|LA|C|2304
7NRC|1|LA|G|2305
7NRC|1|LA|C|2306
7NRC|1|LA|G|2307

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain Lp

60S ribosomal protein L41-A

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain Sm

Transfer RNA; tRNA