3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GCGG*UAC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7NRC_091 not in the Motif Atlas
Homologous match to IL_8C3A_096
Geometric discrepancy: 0.1084
The information below is about IL_8C3A_096
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_63450.5
Basepair signature
cWW-cHS-cWW-cWW-cWW
Number of instances in this motif group
7

Unit IDs

7NRC|1|LA|G|2391
7NRC|1|LA|C|2392
7NRC|1|LA|G|2393
7NRC|1|LA|G|2394
*
7NRC|1|LA|U|2986
7NRC|1|LA|A|2987
7NRC|1|LA|C|2988

Current chains

Chain LA
25S rRNA (3184-MER)

Nearby chains

Chain LE
60S ribosomal protein L3
Chain LQ
60S ribosomal protein L16-A
Chain LR
60S ribosomal protein L17-A

Coloring options:


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