IL_7NRC_109

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

7NRC|1|LA|G|2945, 7NRC|1|LA|A|2946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_109 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.085

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7NRC|1|LA|C|2879
7NRC|1|LA|U|2880
7NRC|1|LA|C|2881
*
7NRC|1|LA|G|2943
7NRC|1|LA|U|2944
7NRC|1|LA|G|2945
7NRC|1|LA|A|2946
7NRC|1|LA|G|2947

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LX

60S ribosomal protein L23-A