IL_7NRC_110

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

7NRC|1|LA|A|2941, 7NRC|1|LA|C|2942

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_110 not in the Motif Atlas

Geometric match to IL_4V9F_088

Geometric discrepancy: 0.1112

The information below is about IL_4V9F_088

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

7NRC|1|LA|C|2881
7NRC|1|LA|U|2882
*
7NRC|1|LA|A|2940
7NRC|1|LA|A|2941
7NRC|1|LA|C|2942
7NRC|1|LA|G|2943

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LX

60S ribosomal protein L23-A

Chain Sm

Transfer RNA; tRNA