IL_7NRC_126
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UACGAAUAAG*CGCUGAA
- Length
- 17 nucleotides
- Bulged bases
- 7NRC|1|LA|A|3180, 7NRC|1|LA|A|3186, 7NRC|1|LA|U|3207, 7NRC|1|LA|A|3209
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRC_126 not in the Motif Atlas
- Homologous match to IL_5TBW_124
- Geometric discrepancy: 0.118
- The information below is about IL_5TBW_124
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15174.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-cSS-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7NRC|1|LA|U|3179
7NRC|1|LA|A|3180
7NRC|1|LA|C|3181
7NRC|1|LA|G|3182
7NRC|1|LA|A|3183
7NRC|1|LA|A|3184
7NRC|1|LA|U|3185
7NRC|1|LA|A|3186
7NRC|1|LA|A|3187
7NRC|1|LA|G|3188
*
7NRC|1|LA|C|3204
7NRC|1|LA|G|3205
7NRC|1|LA|C|3206
7NRC|1|LA|U|3207
7NRC|1|LA|G|3208
7NRC|1|LA|A|3209
7NRC|1|LA|A|3210
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LH
- 60S ribosomal protein L6-B
- Chain LK
- 60S ribosomal protein L9-A
- Chain LO
- 60S ribosomal protein L14-A
- Chain LQ
- 60S ribosomal protein L16-A
- Chain LU
- 60S ribosomal protein L20-A
- Chain Lh
- 60S ribosomal protein L33-A
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