IL_7NRC_130

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_130 not in the Motif Atlas

Geometric match to IL_6MWN_005

Geometric discrepancy: 0.1088

The information below is about IL_6MWN_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

7NRC|1|LA|C|3235
7NRC|1|LA|U|3236
7NRC|1|LA|U|3237
7NRC|1|LA|G|3238
*
7NRC|1|LA|C|3249
7NRC|1|LA|U|3250
7NRC|1|LA|U|3251
7NRC|1|LA|G|3252

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LQ

60S ribosomal protein L16-A