3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UUUG*CUUA
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7NRC_131 not in the Motif Atlas
Geometric match to IL_5TBW_129
Geometric discrepancy: 0.154
The information below is about IL_5TBW_129
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_67085.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
55

Unit IDs

7NRC|1|LA|U|3300
7NRC|1|LA|U|3301
7NRC|1|LA|U|3302
7NRC|1|LA|G|3303
*
7NRC|1|LA|C|3311
7NRC|1|LA|U|3312
7NRC|1|LA|U|3313
7NRC|1|LA|A|3314

Current chains

Chain LA
25S rRNA (3184-MER)

Nearby chains

Chain LE
60S ribosomal protein L3
Chain LR
60S ribosomal protein L17-A
Chain Lf
60S ribosomal protein L31-A

Coloring options:


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