IL_7NRC_135

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUAAG*CUGAG

Length

11 nucleotides

Bulged bases

7NRC|1|LA|G|3369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_135 not in the Motif Atlas

Homologous match to IL_8C3A_139

Geometric discrepancy: 0.1046

The information below is about IL_8C3A_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83162.8

Basepair signature

cWW-cWW-tSH-cWW-tHH-L

Number of instances in this motif group

4

Unit IDs

7NRC|1|LA|U|3332
7NRC|1|LA|G|3333
7NRC|1|LA|U|3334
7NRC|1|LA|A|3335
7NRC|1|LA|A|3336
7NRC|1|LA|G|3337
*
7NRC|1|LA|C|3367
7NRC|1|LA|U|3368
7NRC|1|LA|G|3369
7NRC|1|LA|A|3370
7NRC|1|LA|G|3371

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LY

60S ribosomal protein L24-A

Chain Lf

60S ribosomal protein L31-A