IL_7NRC_138

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CC*GUUG

Length

6 nucleotides

Bulged bases

7NRC|1|LA|U|3354, 7NRC|1|LA|U|3355

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_138 not in the Motif Atlas

Geometric match to IL_5TBW_136

Geometric discrepancy: 0.2935

The information below is about IL_5TBW_136

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

7NRC|1|LA|C|3349
7NRC|1|LA|C|3350
*
7NRC|1|LA|G|3353
7NRC|1|LA|U|3354
7NRC|1|LA|U|3355
7NRC|1|LA|G|3356

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LW

60S ribosomal protein L22-A

Chain SV

40S ribosomal protein S8-A