3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GUUA*UUUC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7NRC_156 not in the Motif Atlas
Homologous match to IL_4V88_391
Geometric discrepancy: 0.1254
The information below is about IL_4V88_391
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_67085.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
55

Unit IDs

7NRC|1|S2|G|109
7NRC|1|S2|U|110
7NRC|1|S2|U|111
7NRC|1|S2|A|112
*
7NRC|1|S2|U|302
7NRC|1|S2|U|303
7NRC|1|S2|U|304
7NRC|1|S2|C|305

Current chains

Chain S2
18S rRNA (1771-MER)

Nearby chains

Chain SS
40S ribosomal protein S4-A
Chain SV
40S ribosomal protein S8-A
Chain SX
40S ribosomal protein S11-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.6178 s