3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CAU*AAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7NRC_171 not in the Motif Atlas
Homologous match to IL_4V88_406
Geometric discrepancy: 0.2683
The information below is about IL_4V88_406
Detailed Annotation
Isolated near basepair
Broad Annotation
Isolated near basepair
Motif group
IL_76004.2
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
18

Unit IDs

7NRC|1|S2|C|411
7NRC|1|S2|A|412
7NRC|1|S2|U|413
*
7NRC|1|S2|A|420
7NRC|1|S2|A|421
7NRC|1|S2|G|422

Current chains

Chain S2
18S rRNA (1771-MER)

Nearby chains

Chain LX
60S ribosomal protein L23-A
Chain ST
40S ribosomal protein S6-A
Chain Sd
40S ribosomal protein S24-A
Chain So
Ribosome-interacting GTPase 2

Coloring options:


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