IL_7NRC_171
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAU*AAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRC_171 not in the Motif Atlas
- Homologous match to IL_4V88_406
- Geometric discrepancy: 0.2683
- The information below is about IL_4V88_406
- Detailed Annotation
- Isolated near basepair
- Broad Annotation
- Isolated near basepair
- Motif group
- IL_76004.2
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 18
Unit IDs
7NRC|1|S2|C|411
7NRC|1|S2|A|412
7NRC|1|S2|U|413
*
7NRC|1|S2|A|420
7NRC|1|S2|A|421
7NRC|1|S2|G|422
Current chains
- Chain S2
- 18S rRNA (1771-MER)
Nearby chains
- Chain LX
- 60S ribosomal protein L23-A
- Chain ST
- 40S ribosomal protein S6-A
- Chain Sd
- 40S ribosomal protein S24-A
- Chain So
- Ribosome-interacting GTPase 2
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