IL_7NRC_173

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCAAU*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_173 not in the Motif Atlas

Geometric match to IL_5J7L_018

Geometric discrepancy: 0.1284

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

7NRC|1|S2|C|443
7NRC|1|S2|C|444
7NRC|1|S2|A|445
7NRC|1|S2|A|446
7NRC|1|S2|U|447
*
7NRC|1|S2|A|460
7NRC|1|S2|G|461

Current chains

Chain S2

18S rRNA (1771-MER)

Nearby chains

Chain SS

40S ribosomal protein S4-A

Chain SW

40S ribosomal protein S9-A

Chain Sd

40S ribosomal protein S24-A