IL_7NRC_176

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAG*CGAGGAAC

Length

11 nucleotides

Bulged bases

7NRC|1|S2|A|541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_176 not in the Motif Atlas

Geometric match to IL_7RQB_082

Geometric discrepancy: 0.3154

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7NRC|1|S2|G|514
7NRC|1|S2|A|515
7NRC|1|S2|G|516
*
7NRC|1|S2|C|536
7NRC|1|S2|G|537
7NRC|1|S2|A|538
7NRC|1|S2|G|539
7NRC|1|S2|G|540
7NRC|1|S2|A|541
7NRC|1|S2|A|542
7NRC|1|S2|C|543

Current chains

Chain S2

18S rRNA (1771-MER)

Nearby chains

Chain SW

40S ribosomal protein S9-A

Chain Sg

40S ribosomal protein S30-A