3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GGA*UUUU
Length
7 nucleotides
Bulged bases
7NRC|1|S2|U|959
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7NRC_192 not in the Motif Atlas
Geometric match to IL_4P3T_005
Geometric discrepancy: 0.1937
The information below is about IL_4P3T_005
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_10289.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
237

Unit IDs

7NRC|1|S2|G|867
7NRC|1|S2|G|868
7NRC|1|S2|A|869
*
7NRC|1|S2|U|958
7NRC|1|S2|U|959
7NRC|1|S2|U|960
7NRC|1|S2|U|961

Current chains

Chain S2
18S rRNA (1771-MER)

Nearby chains

Chain SY
40S ribosomal protein S13
Chain Sf
40S ribosomal protein S27-A

Coloring options:


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