IL_7NRC_203
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGAGUAUG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRC_203 not in the Motif Atlas
- Homologous match to IL_4V88_440
- Geometric discrepancy: 0.0968
- The information below is about IL_4V88_440
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
7NRC|1|S2|G|1111
7NRC|1|S2|G|1112
7NRC|1|S2|A|1113
7NRC|1|S2|G|1114
7NRC|1|S2|U|1115
7NRC|1|S2|A|1116
7NRC|1|S2|U|1117
7NRC|1|S2|G|1118
*
7NRC|1|S2|U|1129
7NRC|1|S2|G|1130
7NRC|1|S2|A|1131
7NRC|1|S2|A|1132
7NRC|1|S2|A|1133
7NRC|1|S2|C|1134
Current chains
- Chain S2
- 18S rRNA (1771-MER)
Nearby chains
- Chain Lp
- 60S ribosomal protein L41-A
- Chain Sc
- 40S ribosomal protein S23-A
Coloring options: