IL_7NRC_217
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGG*CGA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRC_217 not in the Motif Atlas
- Homologous match to IL_4V88_453
- Geometric discrepancy: 0.1137
- The information below is about IL_4V88_453
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10167.1
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 48
Unit IDs
7NRC|1|S2|U|1290
7NRC|1|S2|G|1291
7NRC|1|S2|G|1292
*
7NRC|1|S2|C|1323
7NRC|1|S2|G|1324
7NRC|1|S2|A|1325
Current chains
- Chain S2
- 18S rRNA (1771-MER)
Nearby chains
- Chain SA
- 40S ribosomal protein S3
- Chain SG
- 40S ribosomal protein S17-B
- Chain SP
- 40S ribosomal protein S0-A
- Chain SR
- 40S ribosomal protein S2
Coloring options: