IL_7NRC_220

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

7NRC|1|S2|A|1346, 7NRC|1|S2|U|1347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_220 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.1751

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

7NRC|1|S2|A|1345
7NRC|1|S2|A|1346
7NRC|1|S2|U|1347
7NRC|1|S2|A|1348
*
7NRC|1|S2|U|1377
7NRC|1|S2|U|1378
7NRC|1|S2|C|1379
7NRC|1|S2|U|1380

Current chains

Chain S2

18S rRNA (1771-MER)

Nearby chains

Chain SA

40S ribosomal protein S3

Chain SF

40S ribosomal protein S16-A

Chain SJ

40S ribosomal protein S20