3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GUG*UUAUC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7NRC_221 not in the Motif Atlas
Homologous match to IL_8C3A_464
Geometric discrepancy: 0.4531
The information below is about IL_8C3A_464
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_86319.3
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
269

Unit IDs

7NRC|1|S2|G|1352
7NRC|1|S2|U|1353
7NRC|1|S2|G|1354
*
7NRC|1|S2|U|1369
7NRC|1|S2|U|1370
7NRC|1|S2|A|1371
7NRC|1|S2|U|1372
7NRC|1|S2|C|1373

Current chains

Chain S2
18S rRNA (1771-MER)

Nearby chains

Chain SF
40S ribosomal protein S16-A
Chain SI
40S ribosomal protein S19-A
Chain SJ
40S ribosomal protein S20

Coloring options:


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