IL_7NRC_222
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUA*UGGAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRC_222 not in the Motif Atlas
- Geometric match to IL_4V88_458
- Geometric discrepancy: 0.1436
- The information below is about IL_4V88_458
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- Major groove platform
- Motif group
- IL_58032.1
- Basepair signature
- cWW-tWH-cWW-L-L-R
- Number of instances in this motif group
- 2
Unit IDs
7NRC|1|S2|C|1389
7NRC|1|S2|U|1390
7NRC|1|S2|A|1391
*
7NRC|1|S2|U|1407
7NRC|1|S2|G|1408
7NRC|1|S2|G|1409
7NRC|1|S2|A|1410
7NRC|1|S2|A|1411
7NRC|1|S2|G|1412
Current chains
- Chain S2
- 18S rRNA (1771-MER)
Nearby chains
- Chain SB
- 40S ribosomal protein S5
- Chain SF
- 40S ribosomal protein S16-A
- Chain SG
- 40S ribosomal protein S17-B
- Chain SO
- Guanine nucleotide-binding protein subunit beta-like protein
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